About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3342172_3342459_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3342172 - 3342459
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
CCCTGTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTCAAT
U12 Branch Point Sequence:
TGTGGTTCAATC
Flanking Amino Acid:
FAGKVKYQIKDFREKNMDYM
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
75.1
35.1
Major BPS
59.1
0.23
1.5
70.7
42.6
Major PPT
78.1
0.63
0.8
72
32.6
Minor 5ss
34.7
-1.7
3.6
48.3
42.4
Minor BPS
46.6
-0.2
2
58.66
41.1

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464