About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3343311_3344891_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3343311 - 3344891
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
TGAATCGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGAAT
U12 Branch Point Sequence:
TTTGCTGTGAAT
Flanking Amino Acid:
RSNTPVEKVYRDMHEQIIAS
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
71.5
33.8
Major BPS
59.4
0.24
1.5
69.7
44.2
Major PPT
66.3
0.37
1
62.6
43.9
Minor 5ss
28.8
-2.4
2.8
35.7
40.8
Minor BPS
48.7
-0
2.2
75.57
41.7

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023818
3322770 - 3360746
37977