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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3343311_3346177_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3343311 - 3346177
Intron Length:
2867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
AATATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATCTTTAATA
Flanking Amino Acid:
RSNTPVEKVYRKSRGIKQKQ
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
71.5
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
71.9
0.49
1
66.5
43.1
Minor 5ss
28.8
-2.4
2.8
35.7
40.8
Minor BPS
76.3
0.82
1.1
76.92
33.9

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020377
3326283 - 3360746
34464