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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3343853_3344891_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3343853 - 3344891
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGAATCGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGAAT
U12 Branch Point Sequence:
TTTGCTGTGAAT
Flanking Amino Acid:
EDIISFYENKKDMHEQIIAS
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
59.4
0.24
1.5
69.7
44.2
Major PPT
66.3
0.37
1
62.6
43.9
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
48.7
-0
2.2
75.57
41.7

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013764
3326283 - 3360746
34464