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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3343853_3346177_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3343853 - 3346177
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATCTTTAATA
Flanking Amino Acid:
EDIISFYENKKKSRGIKQKQ
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
71.9
0.49
1
66.5
43.1
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
76.3
0.82
1.1
76.92
33.9

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024295
3326283 - 3360746
34464