Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3345003_3346177_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3345003 - 3346177

Intron Length:

1175

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

AATATTTTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGATCTTTAATA

Flanking Amino Acid:

LNRLQHRSHFMKSRGIKQKQ

Intron Amino Acid Position:

802

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

79.6

29.1

Major BPS

100

1.24

0.5

100

Major PPT

71.9

0.49

66.5

43.1

Minor 5ss

39.8

-1.1

55.2

42.1

Minor BPS

76.3

0.82

1.1

76.92

33.9

Associated Gene:

Gene:

MYO9B

Ensembl Gene ID:

ENSAPLG00000013123

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013764

3326283 - 3360746

34464

ENSAPLT00000023818

3322770 - 3360746

37977