About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3346218_3346689_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3346218 - 3346689
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TGATTATGAATT
Flanking Amino Acid:
GIKQKQIIPKNLLDSKSLKL
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
75.5
0.63
1
66
40.9
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
53.4
0.18
1.7
71.72
38.8

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464