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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3348303_3348798_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3348303 - 3348798
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGAA
5'SS Class:
major
3'SS Sequence:
TTTAACTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
KNYCQIGKTKVFMKEAERQI
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.3
70.3
35.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
67.4
0.39
1.1
63.2
42.5
Minor 5ss
33.5
-1.9
3
40.4
45.8
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464