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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3348949_3349062_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3348949 - 3349062
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTG
5'SS Class:
weak_major
3'SS Sequence:
TATCCCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TCCTCCTTCACT
Flanking Amino Acid:
RTRQAAIVLQACWRSRCVRR
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
71.4
41.2
Major BPS
64.9
0.37
1
61
37.5
Major PPT
75.5
0.57
0.8
73.7
30.9
Minor 5ss
69
0.64
1.8
75.5
40.6
Minor BPS
71.5
0.76
1.8
83.36
44

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464