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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3350550_3351056_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3350550 - 3351056
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TGTAACATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AATCTTGTAACA
Flanking Amino Acid:
RADQSPQDPLAKKGTSSSLN
Intron Amino Acid Position:
1384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.4
57.6
41.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.3
0.48
1
63.2
42.5
Minor 5ss
30.4
-2.2
3.5
34.3
41.8
Minor BPS
49.7
-0
2
63.78
36.4

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464