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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3352521_3352948_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3352521 - 3352948
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TGAAACTTGATG
Flanking Amino Acid:
KHLDEFLLNKINDLRSQKSG
Intron Amino Acid Position:
1567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
80.7
0.69
0.9
77.4
41.2
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
49.5
-0.1
1.6
54.01
40.7

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977