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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3353730_3354222_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3353730 - 3354222
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAAAC
5'SS Class:
major
3'SS Sequence:
TACTTCACTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGTACTTCACT
Flanking Amino Acid:
AKKEESEQPKQTKAQKKKRK
Intron Amino Acid Position:
1659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
70.1
33.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.1
0.61
0.9
70.8
34.3
Minor 5ss
39.2
-1.2
2.9
51.4
45.5
Minor BPS
58.2
0.34
2
76.54
45.9

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977