About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3354265_3354856_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3354265 - 3354856
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTCTCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAT
U12 Branch Point Sequence:
AGTCCATTAGAT
Flanking Amino Acid:
QKKKRKQDRSIEEHNGHVFT
Intron Amino Acid Position:
1673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
70.4
0.51
1
66.8
39.9
Major PPT
71.5
0.48
0.9
63.8
38
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
48.1
-0
1.9
68.13
41.5

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464