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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3356140_3356427_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3356140 - 3356427
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGGCAA
5'SS Class:
major
3'SS Sequence:
CATTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ACTACATTAAAT
Flanking Amino Acid:
MKELKQLLQADPNSVKLENY
Intron Amino Acid Position:
1798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
58.4
42.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
87.1
0.84
0.7
84.7
29.7
Minor 5ss
31.6
-2.1
3.1
38.4
46.6
Minor BPS
57.8
0.32
1.8
74.12
41.9

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464