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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3356557_3357180_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3356557 - 3357180
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CAGCAATTAAAA
Flanking Amino Acid:
AQYNDFLRAVELPEKQEQLC
Intron Amino Acid Position:
1841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84
30.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76.2
0.59
0.9
71.7
32.7
Minor 5ss
40.5
-1.1
3.2
57.3
47.4
Minor BPS
44.4
-0.4
1.8
49.99
40

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020377
3326283 - 3360746
34464
ENSAPLT00000013764
3326283 - 3360746
34464
ENSAPLT00000024295
3326283 - 3360746
34464
ENSAPLT00000023818
3322770 - 3360746
37977