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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3359073_3360082_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3359073 - 3360082
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AACTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTCATAAAAC
Flanking Amino Acid:
RRLSLLRQNTSKSPQVKGND
Intron Amino Acid Position:
1932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
70.7
0.47
0.9
62.4
38.8
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
49.7
-0
2
64.95
39.8

Associated Gene:

Gene:
MYO9B
Ensembl Gene ID:
ENSAPLG00000013123
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023818
3322770 - 3360746
37977