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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3362541_3362778_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3362541 - 3362778
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GATTAAAAAACT
Flanking Amino Acid:
RDPEEWRLEKYVAALEDMLR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
43.3
-0.4
2.2
65.79
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021258
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021146
3362439 - 3364249
1811