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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3362829_3363322_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3362829 - 3363322
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCAATTCCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
DMLRELKKQSSKPAPELLNE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
63.8
0.31
0.9
59.3
36.7
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021258
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021146
3362439 - 3364249
1811