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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3363402_3363931_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3363402 - 3363931
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTAATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTCTTAATT
Flanking Amino Acid:
LKGLLEAEKLSSSTEKALAN
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
100
1.24
0.5
100
0
Major PPT
79.3
0.66
0.8
74.1
34.3
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
83.3
1.12
1
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021258
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021146
3362439 - 3364249
1811