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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3365036_3365095_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3365036 - 3365095
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACAAATT
5'SS Class:
major
3'SS Sequence:
GTCTGATGAGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTGTGTCTGATG
Flanking Amino Acid:
PQGAVSTHKKQSAVELDAVL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
71.8
37.9
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
49.5
-0
1.2
49.8
42.2
Minor 5ss
39.4
-1.2
3.5
57.5
41.3
Minor BPS
44.9
-0.5
2.1
54.25
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025695
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020533
3362982 - 3365938
2957