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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3419926_3420586_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3419926 - 3420586
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
AACATGTCAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCATTTGTAACA
Flanking Amino Acid:
EPTYFYVADYSANVLKDLCF
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
72.3
32.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
48.8
-0
1.1
45.8
39.7
Minor 5ss
40
-1.1
3
56.6
41.9
Minor BPS
54.4
0.13
2
66.93
40.2

Associated Gene:

Gene:
INSR
Ensembl Gene ID:
ENSAPLG00000014259
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019599
3380579 - 3424833
44255