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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3421123_3421474_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3421123 - 3421474
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTCATTTATTT
Flanking Amino Acid:
VMKGFSCHHVVRLLGVVSKG
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
86
0.81
0.8
77.6
40.7
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
50.5
0.09
1.8
69.9
41.6

Associated Gene:

Gene:
INSR
Ensembl Gene ID:
ENSAPLG00000014259
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019599
3380579 - 3424833
44255
ENSAPLT00000014935
3380614 - 3424833
44220