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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3423087_3424484_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3423087 - 3424484
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTGTAAGT
5'SS Class:
major
3'SS Sequence:
CAACTAGGCACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TTGTCCTCAACT
Flanking Amino Acid:
YLDQPDNCPESLMQMCWQYN
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.3
59.6
44.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
53.3
0.08
1.1
45.7
40
Minor 5ss
19.9
-3.5
3.7
32.6
41.6
Minor BPS
79.7
1.01
1.4
92.53
36.3

Associated Gene:

Gene:
INSR
Ensembl Gene ID:
ENSAPLG00000014259
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014935
3380614 - 3424833
44220