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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_344852_344931_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
344852 - 344931
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGCCG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
CACGTCTCAACC
Flanking Amino Acid:
VGDIIDILLEDISGWWKGRL
Intron Amino Acid Position:
1075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
58.1
46.4
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
86.4
0.82
0.7
80
32
Minor 5ss
30
-2.3
3.4
39.4
46
Minor BPS
49.2
-0
1.7
54.79
43.5

Associated Gene:

Gene:
MYO1F
Ensembl Gene ID:
ENSAPLG00000002919
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026003
343775 - 358085
14311
ENSAPLT00000024598
343775 - 358085
14311
ENSAPLT00000003067
343775 - 358085
14311