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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_345503_345616_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
345503 - 345616
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GGGGTTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
CCTGCAATAACT
Flanking Amino Acid:
PSRSAPPAPQGTFKNGAPQF
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
64.7
0.33
1.1
53.8
49.8
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
49.2
0.02
2
69.76
46.7

Associated Gene:

Gene:
MYO1F
Ensembl Gene ID:
ENSAPLG00000002919
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026003
343775 - 358085
14311
ENSAPLT00000024598
343775 - 358085
14311
ENSAPLT00000003067
343775 - 358085
14311