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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3460645_3461455_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3460645 - 3461455
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTTGTCTAATCT
Flanking Amino Acid:
LSTAEAVSKFRLISGDMDEG
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
73
0.52
0.9
70.9
40.1
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
53.9
0.2
2
78.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015732
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016437
3455667 - 3475796
20130