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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3462961_3463680_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3462961 - 3463680
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGAATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATA
Flanking Amino Acid:
QNIGDLLVKQFSGENGERMK
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
82.4
29.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.7
0.42
1
68.8
37.1
Minor 5ss
40.1
-1.1
3.1
57.1
47.2
Minor BPS
65.8
0.49
1.4
71.62
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015732
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016437
3455667 - 3475796
20130