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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3463807_3465092_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3463807 - 3465092
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
ATATATACAATG
Flanking Amino Acid:
NHKKFQNLIKKIGNSSIVRR
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
83.9
0.76
0.8
76.9
37.3
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
43.1
-0.6
1.9
49.1
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015732
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016437
3455667 - 3475796
20130