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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3465211_3465635_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3465211 - 3465635
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTCT
5'SS Class:
major
3'SS Sequence:
CCTTCTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TAATTACTATCC
Flanking Amino Acid:
LVERIIQNTEAGTKDYEELT
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
74.3
37
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
76.2
0.59
0.7
69
31.5
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
44.6
-0.4
2
58.39
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015732
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016437
3455667 - 3475796
20130