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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3467377_3467767_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3467377 - 3467767
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATGTGTAAAT
Flanking Amino Acid:
WMAHIRRAVESCPDEEGGTF
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.2
0.84
0.7
82.2
26.6
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
45.3
-0.2
2.4
67
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015732
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016437
3455667 - 3475796
20130