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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3467860_3468163_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3467860 - 3468163
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GAAGGTATAACT
Flanking Amino Acid:
ARAARLRDFQERLSMKDDLI
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
70
0.5
1
67
39.8
Major PPT
86.6
0.82
0.6
85.9
21.2
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
44.5
-0.3
2
59.61
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015732
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016437
3455667 - 3475796
20130