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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3475553_3475635_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3475553 - 3475635
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATGAA
U12 Branch Point Sequence:
GTGTCATGAATC
Flanking Amino Acid:
PSSQTTAFQTELYGSTDGQP
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
62.9
0.32
1.1
53.9
41.5
Major PPT
85.7
0.8
0.7
81.4
30
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
55.1
0.14
1.7
65.53
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015732
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016437
3455667 - 3475796
20130