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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_348418_348506_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
348418 - 348506
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
ACACCTTTAACG
Flanking Amino Acid:
RPTTAGSKIKKQANDLVNTL
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
68.4
0.41
1
63.2
36.4
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
63.7
0.29
1.4
60.08
41.7

Associated Gene:

Gene:
MYO1F
Ensembl Gene ID:
ENSAPLG00000002919
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026003
343775 - 358085
14311
ENSAPLT00000024598
343775 - 358085
14311
ENSAPLT00000003067
343775 - 358085
14311