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Intron Name: Anas_platyrhynchos_platyrhynchos_29_3489966_3490808_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3489966 - 3490808

Intron Length:

843

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGT|GCACGTCCC

5'SS Class:

weak_major

3'SS Sequence:

CCAAACGTGTAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

CACTTTGCAACT

Flanking Amino Acid:

VEHPRRNAFYSVSGFG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.21

1.4

62.7

39.7

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

46.9

-0.1

1.2

44.5

Minor 5ss

26.1

-2.7

37.1

40.1

Minor BPS

44.5

-0.3

2.1

44.1

Associated Gene:

Gene:

PGPEP1

Ensembl Gene ID:

ENSAPLG00000007370

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007648

3489948 - 3497176

7229