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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_350708_350790_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
350708 - 350790
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGTC
5'SS Class:
major
3'SS Sequence:
CCTGCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAC
U12 Branch Point Sequence:
CTGACCCCAACA
Flanking Amino Acid:
DDRNDFHETMNAMQVIGIRG
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
68.4
36.9
Major BPS
51.2
0.03
0.9
58.7
27.5
Major PPT
70.8
0.47
0.8
61.4
35
Minor 5ss
30.6
-2.2
3.5
39.3
41.1
Minor BPS
48.2
-0.1
2
61.31
44.3

Associated Gene:

Gene:
MYO1F
Ensembl Gene ID:
ENSAPLG00000002919
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026003
343775 - 358085
14311
ENSAPLT00000024598
343775 - 358085
14311
ENSAPLT00000003067
343775 - 358085
14311