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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_351626_352130_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
351626 - 352130
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGGC
5'SS Class:
major
3'SS Sequence:
GCCATTTACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTGCCATTTACA
Flanking Amino Acid:
IDGENQCVIISGESGAGKTV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
59.8
39
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
66.4
0.37
1
60.3
39.5
Minor 5ss
27.5
-2.6
3.8
40.6
46
Minor BPS
54.9
0.15
2
70.45
41.1

Associated Gene:

Gene:
MYO1F
Ensembl Gene ID:
ENSAPLG00000002919
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026003
343775 - 358085
14311
ENSAPLT00000024598
343775 - 358085
14311
ENSAPLT00000003067
343775 - 358085
14311