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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_352226_357759_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
352226 - 357759
Intron Length:
5534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CTGCTCAGCACT
Flanking Amino Acid:
MAQYENPPHIY
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
70.7
0.47
0.8
61.8
34.9
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
41.4
-0.5
2
58.62
44.3

Associated Gene:

Gene:
MYO1F
Ensembl Gene ID:
ENSAPLG00000002919
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024598
343775 - 358085
14311