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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3543402_3545293_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3543402 - 3545293
Intron Length:
1892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
ATTCTCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ACTCACTAAACC
Flanking Amino Acid:
TSTSEMPDYLLKYAAISSSE
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
76
0.58
0.8
67.5
34.5
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
51.3
0.02
1.9
63.29
41.9

Associated Gene:

Gene:
ELL
Ensembl Gene ID:
ENSAPLG00000006360
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006619
3540252 - 3566668
26417