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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3551714_3554839_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3551714 - 3554839
Intron Length:
3126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGGATTTTAACG
Flanking Amino Acid:
DQQLLKRILVRKLCQPQNSG
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
84.1
33.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
42.2
-0.9
2.9
61.4
42.9
Minor BPS
56.2
0.06
1.4
54.64
40.7

Associated Gene:

Gene:
ELL
Ensembl Gene ID:
ENSAPLG00000006360
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006619
3540252 - 3566668
26417