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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3558246_3560901_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3558246 - 3560901
Intron Length:
2656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CATCTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTATTCTCATCT
Flanking Amino Acid:
IVIKPGGRYVGKKVQVRKPA
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
0.8
70.7
34.3
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
53.6
0.19
1.8
72.57
44.3

Associated Gene:

Gene:
ELL
Ensembl Gene ID:
ENSAPLG00000006360
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006619
3540252 - 3566668
26417