About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3561066_3561392_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3561066 - 3561392
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ACCTTTTCCATT
Flanking Amino Acid:
SFDCIQQYVSSNGNIQLDCL
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
44.2
-0.3
1.8
56.89
41.1

Associated Gene:

Gene:
ELL
Ensembl Gene ID:
ENSAPLG00000006360
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006619
3540252 - 3566668
26417