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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3561515_3566206_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3561515 - 3566206
Intron Length:
4692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
GCTACCTAAATG
Flanking Amino Acid:
PVIQFQGSQGHIAIPRPDRP
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
74.4
0.55
0.8
69.8
29.6
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
52.8
-0
1.8
56.54
45.1

Associated Gene:

Gene:
ELL
Ensembl Gene ID:
ENSAPLG00000006360
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006619
3540252 - 3566668
26417