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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3588376_3591406_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3588376 - 3591406
Intron Length:
3031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGACCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TGTTCTTGACCT
Flanking Amino Acid:
VVLAACSDYFRAMFTGGMRE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
76.7
0.6
0.9
66.8
39.6
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
62.2
0.46
1.8
81.55
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011078
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018542
3588053 - 3595673
7621
ENSAPLT00000011525
3588053 - 3593511
5459
ENSAPLT00000043418
3588053 - 3594355
6303
ENSAPLT00000029390
3588193 - 3595673
7481