Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3592971_3593550_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3592971 - 3593550

Intron Length:

580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGACC

5'SS Class:

major

3'SS Sequence:

TTGCTTTTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCAAA

U12 Branch Point Sequence:

GATTCCAAAAGC

Flanking Amino Acid:

IACAPVILPQVTRFLSPPPK

Intron Amino Acid Position:

630

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

1.2

70.5

40.1

Major BPS

62.7

0.32

1.2

33.2

Major PPT

72.3

0.5

34.5

Minor 5ss

39.1

-1.2

3.1

52.8

44.1

Minor BPS

46.9

-0.2

2.2

61.39

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011078

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043418

3588053 - 3594355

6303