Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3592971_3595047_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3592971 - 3595047

Intron Length:

2077

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGACC

5'SS Class:

major

3'SS Sequence:

TCTGAACGTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TTTTTCTGAACG

Flanking Amino Acid:

IACAPVILPQL*

Intron Amino Acid Position:

630

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

1.2

70.5

40.1

Major BPS

82.1

0.8

71.6

36.4

Major PPT

66.1

0.36

1.1

58.7

41.8

Minor 5ss

39.1

-1.2

3.1

52.8

44.1

Minor BPS

75.5

0.66

1.4

80.07

35.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011078

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018542

3588053 - 3595673

7621