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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3605061_3626494_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3605061 - 3626494
Intron Length:
21434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
TTGCCCTTACAC
Flanking Amino Acid:
KDLSLTRAHRLQLQKTQYLQ
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.1
43
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
26.7
-2.7
2.9
23.8
36.7
Minor BPS
58.3
0.24
1.8
69.2
41.9

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021220
3604668 - 3649211
44544
ENSAPLT00000011115
3604668 - 3649211
44544
ENSAPLT00000037235
3604668 - 3649211
44544
ENSAPLT00000035958
3604668 - 3649211
44544