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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3626612_3628180_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3626612 - 3628180
Intron Length:
1569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTTACA
Flanking Amino Acid:
GNSAMDLPFQHNGALAEAFG
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83.5
0.75
0.8
76.9
36.3
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
58.7
0.27
2
76.76
39.9

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037235
3604668 - 3649211
44544
ENSAPLT00000035958
3604668 - 3649211
44544
ENSAPLT00000021220
3604668 - 3649211
44544