About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3626612_3631176_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3626612 - 3631176
Intron Length:
4565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GCGTGTCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTGACTTTATG
Flanking Amino Acid:
GNSAMDLPFQTPFQSSGLDT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
75.1
0.62
1
65.6
41
Major PPT
69.2
0.43
1
65.1
41.2
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
48
-0.3
2
57.05
44.3

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011115
3604668 - 3649211
44544