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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3628229_3631176_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3628229 - 3631176
Intron Length:
2948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAACAAG
5'SS Class:
major
3'SS Sequence:
GCGTGTCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTGACTTTATG
Flanking Amino Acid:
EAFGAVPVSLTPFQSSGLDT
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
63.9
41.9
Major BPS
75.1
0.62
1
65.6
41
Major PPT
69.2
0.43
1
65.1
41.2
Minor 5ss
38.2
-1.3
3
44.9
44.4
Minor BPS
48
-0.3
2
57.05
44.3

Associated Gene:

Gene:
CRTC1
Ensembl Gene ID:
ENSAPLG00000010657
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035958
3604668 - 3649211
44544
ENSAPLT00000021220
3604668 - 3649211
44544
ENSAPLT00000037235
3604668 - 3649211
44544