Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_3631315_3632127_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

3631315 - 3632127

Intron Length:

813

Sequence Information:

Terminal Dinucleotides:

AT-AC

5'SS Sequence:

CAA|ATATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

CCGACTGAATCAC|G

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

CCTTAAC

U12 Branch Point Sequence:

TTCCCCTTAACC

Flanking Amino Acid:

PLSVDKHGRQVDSCPYGTVY

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

34.5

-0.9

3.4

43.9

Major BPS

64.7

0.37

1.1

67.2

35.2

Major PPT

33.8

-0.9

3.1

43.4

41.3

Minor 5ss

99.7

1.65

0.6

98.9

3.35

Minor BPS

82.4

1.1

84.26

34.8

Associated Gene:

Gene:

CRTC1

Ensembl Gene ID:

ENSAPLG00000010657

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037235

3604668 - 3649211

44544

ENSAPLT00000035958

3604668 - 3649211

44544

ENSAPLT00000021220

3604668 - 3649211

44544

ENSAPLT00000011115

3604668 - 3649211

44544